PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533402.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 306aa    MW: 34478.3 Da    PI: 8.4814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-173279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
   XP_023533402.1 32 KGPWTPEEDIVLVSYIQEHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 79
                     79******************************99************97 PP
2Myb_DNA-binding49.97.1e-1685130148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_023533402.1  85 RGNFTDQEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 130
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MLLLLLLLLC LRNLKAKDMG RPPCCDKNGV KKGPWTPEED IVLVSYIQEH GPGNWRAVPA  60
NTGLLRCSKS CRLRWTNYLR PGIKRGNFTD QEEKMIVHLQ ALLGNRWAAI ASYLPQRTDN  120
DIKNYWNTHL KKKLRKVQVS SMGHFGDGFS SSSSSMPRGQ WEKRLQTDIR MARQALWEAL  180
TPQNSAPFGE IIKPSYHKVQ STGYASSTEN IAKLLTGWMK NPPKTTAERC PNGGSSGGGA  240
DECEDNMGSF FRFECFETSK SNSEEMKADP DVHDLPLSML EKWLFEESGG VLQGRDHDHC  300
LDNIGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-106MYB family protein