PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533585.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24807.7 Da    PI: 9.0211
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533585.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+s+
  XP_023533585.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSN 59
                    79***********************************************95 PP
2K-box67.44.8e-23971722398
           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + k+++ L+  +R+l+G++L+ +s++eLqqLe+q+e+sl+kiRs+K++ll+e+i +l++ ek+l een aL kk+
  XP_023533585.1  97 TMTKKLQHLEVCKRKLMGDSLDLCSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKV 172
                     5899*********************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSNC  60
SMNKTIDRYQ NRTKEIMCTN NQGLEDVQLE KEFDSFTMTK KLQHLEVCKR KLMGDSLDLC  120
SMEELQQLER QIERSLTKIR SRKYQLLKEE ITKLKEEEKM LLEENAALLK KVGSEWKHQD  180
EAMDVETQLF IGPSDRRGGS GFLCRYLHNQ PT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.19e-57MIKC_MADS family protein