PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023533679.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 298aa MW: 33720.3 Da PI: 8.0765

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023533679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	106	157	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ + + ++ Lr+l+P++ + ++ + a+i+ Ave++k+L+ XP_023533679.1 106 QRMTHIAVERNRRKLMSEHLSVLRSLMPES---YVQRGDQASIVGGAVEFVKELE 157 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MSIDALSSND LFNLIIYDAI SPTPNTSHGV CDSSETTFFS DEKGLKHQDH HQHGTLEHRP 60 KPNLARKRHP NEAESSNWGA VGLQQGKKKR KRKPKACKNK EEAETQRMTH IAVERNRRKL 120 MSEHLSVLRS LMPESYVQRG DQASIVGGAV EFVKELEHVL STLEAKKLQI LHQEIEEKQE 180 NYKNEDSVRR KLFSDSNSSQ YSAKSKASSA DIEVTLIETH ANLRILSIRT HRQLLKLIAG 240 LQALRLTILH LNVTDFHPLV LYSISLKVEE GCQLRSVDDI AAAAHEMVRI IEEEGVLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	93	KKKRKRK
2	88	93	KKRKRK
3	107	118	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	9e-59	bHLH family protein