PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533833.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 263aa    MW: 30127.6 Da    PI: 6.2392
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l++ +   G  +W+++++  g++R++k+c++rw +yl
   XP_023533833.1 14 KGPWTADEDNKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1670111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
   XP_023533833.1  70 LSEAEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      5899***************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MGRQPCCDKL GVKKGPWTAD EDNKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SEAEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHEPLQ KQQEDQKNEC LNPNNNKKTK KTAESSAGNH HCKEENESVM DNSSSPAKTE  180
NSSSVNTDES LLLDNLINTS FWIEEEALWD NNNPSGYGGN FSWEENWSWL HECEDFGIHD  240
FGFDCFNDFE LNAINTTETE GKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.16e-94MYB family protein