PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023533866.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 220aa MW: 24752.9 Da PI: 10.8882

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023533866.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.9e-16	34	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+q+G+ +W+ Ia+++ R++k+c++rw++ XP_023533866.1 34 RGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE-ARSGKSCRLRWYNQ 79 899***************************.**********96 PP
2	Myb_DNA-binding	49.9	7.4e-16	86	129	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eE+e+l+ +++G++ W++Iar++ gRt++ +k++++ XP_023533866.1 86 KNPFTEEEEERLLIFQRLHGNK-WALIARHFK-GRTDNAVKNHYHV 129 689*****************.****9.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MRMIGSRSSS SSSGGGGGGG GGCGSGSSGV TCYRGHWRPA EDNKLRQLVE QFGPQNWNYI 60 AEHFEARSGK SCRLRWYNQL DPNINKNPFT EEEEERLLIF QRLHGNKWAL IARHFKGRTD 120 NAVKNHYHVI MARRRRERFT IFTNNSNILR SRHCLLPFSN VLQSSHQKMT PKWSPLTAGP 180 TLENGRGKSV AVVASSGSEE MKGEQKRRIP FIDFLGMGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33450.1	7e-61	MYB family protein