PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534223.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 289aa MW: 32939.1 Da PI: 7.0096

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g++R++k+c++rw +yl XP_023534223.1 14 KGPWTPEEDRKLVDYIEKHGHGSWRSLPNLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.9	7.1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +E++++++++ lG++ W+ Iar+++ gRt++++k++w++ XP_023534223.1 67 RGNFSDQEEQIIINLHGALGNK-WSIIARHLP-GRTDNEIKNFWNTN 111 89******************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MMSRSPTLEN GVKKGPWTPE EDRKLVDYIE KHGHGSWRSL PNLAGLNRCG KSCRLRWTNY 60 LRPDIIRGNF SDQEEQIIIN LHGALGNKWS IIARHLPGRT DNEIKNFWNT NLKKKLQRMG 120 IDPITHMPRT NPYLNNLSNL HHLLSFSTAP WDNPLGLHAQ ITQLARAQLL QNLWQLPSPS 180 SPSLYNSLFN AQQISSLQTL PISVEPSEKP LSCEDYDGAM DDTLGFRNDS NQSETPYGMS 240 QSSSSLPNLI PISLECSKIP TVVEDKWEDK WEDLINGEES NSYWKHVVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-71	MYB family protein