PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023534245.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 810aa    MW: 90038.2 Da    PI: 5.9651
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023534245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.9e-2090145156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_023534245.1  90 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 145
                     688899***********************************************998 PP
2START155.54.4e-492925173206
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     a + ++elvk+  ++ep+W + s  e g+evl  +e ++               +++ea r+s+vv+m++ +lv  +ld + +W e ++    ka
  XP_023534245.1 292 AISSMAELVKMCRLTEPLWIRNS--ESGKEVLNVEEHARMfpwplnlkqhlmneFRTEATRDSAVVIMNSITLVDAFLDAN-KWMELFPslvaKA 383
                     67899******************..99*****999998889****************************************.************* PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                     +t++ iss       g l lm+aelqalspl p R+  f+R+++q   +g+w+ivd  +ds  +   ++s+ R +++pSg++i++++ng+s+vtw
  XP_023534245.1 384 KTVQIISSSvsghasGSLRLMYAELQALSPLIPtREAHFLRCCQQnADEGSWAIVDFPIDSFHDSL-QHSFPRYRRRPSGCIIQDMPNGYSRVTW 477
                     *********************************************9999*************9987.9*************************** PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     veh++ +++ +h++++ +v+sg+a+ga +w+a lqrqce+
  XP_023534245.1 478 VEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCER 517
                     **************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    
MYGDCQVMSS NMGANMASSE SLFSSPIQNP NFNFISNFHH FPSIVPKEEN GLIMRGKEDM  60
ESGSGSEQLV EENPGIEMES NDNIMQNQKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL  120
KLSQELGLKP RQVKFWFQNR RTQMKAQQDR SDNVILRSEN DTLKNENYRL QTALRNIICP  180
SCGGQGILGE PSLDEQQLRL ENARLREQLE QVCSFTSRYT GRPLQGMSST APPLMQPSLD  240
LDMNIYSRQY TEAMVSSSEM MPLASMLPPD AAHFPEGGLL IEEEKTLAMD LAISSMAELV  300
KMCRLTEPLW IRNSESGKEV LNVEEHARMF PWPLNLKQHL MNEFRTEATR DSAVVIMNSI  360
TLVDAFLDAN KWMELFPSLV AKAKTVQIIS SSVSGHASGS LRLMYAELQA LSPLIPTREA  420
HFLRCCQQNA DEGSWAIVDF PIDSFHDSLQ HSFPRYRRRP SGCIIQDMPN GYSRVTWVEH  480
AEIEEKPIHQ IFNNFVHSGM AFGAHRWLAI LQRQCERIAS LMARNISDLG VIPSPEARQN  540
LMKLAQRMTR TFSLNISTSG GQSWTALSDS PDDTVRITTR KIVEPGQPNG VILSAVSTTW  600
LPYPHYGVFD LLRDERQRSQ LEVLSNGNSL HEVAHIANGS HPGNCISLLR INVASNFSQH  660
VELMLQESCT DQSGSLVVFA TIDVDSIQLA MSGEDSSSIP LLPIGFSIVP VVDSTADGRL  720
ASSPPKDGAT NAAVVNSGCL LTVGLQVLAS TIPSAKLNLS SVTAINNQLC NTLHQINAAL  780
GCSSTQLENA NATVDQNTAL PLPTQPPPKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein