PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534298.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 167aa MW: 18919.1 Da PI: 8.2865

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H XP_023534298.1 43 YTCNFCRREFKSAQALGGHMNVH 65 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MEGGEYRSMS NGKVVKNEEQ QWGFAKQETF SSDQFLHWPA RKYTCNFCRR EFKSAQALGG 60 HMNVHRRDRG RLRYWSSWMH NNSYPTPSFC LPPPPPSCFS FRPSIENSSL SCIEGSGSCS 120 RSNEGDEDAD VDGVKKKKRK KGSVNLEGKM GNLVGCSSED LDLELHL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	140	KKKKRK
2	135	141	KKKKRKK
3	137	141	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	2e-20	C2H2 family protein