PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534326.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 410aa MW: 47317 Da PI: 9.9089

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.9	2.2e-14	22	107	3	94
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +l+ s++ + + l++p +f++ + + s tl+ ++g +W+v l rk ++++++++GW +F + +++g +vF+++g+s+f ++ XP_023534326.1 22 HKLVLSSTIQARKLRIPESFLRMIRDD--LSAVATLTVPDGHVWRVGL--RKADNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSF--CI 107 4556677777778******999777..7889***********..********************************9998..44 PP
2	B3	62.2	8.8e-20	287	377	4	98
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ y+ + r l++GW eF+ +n+L egD++vF+l + +e l+v++f XP_023534326.1 287 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTPDGRQWPVRCLYKVG--RAKLSQGWYEFCLENNLGEGDVCVFELLRVREIVLKVTMF 376 78899****************866743...5***********55555..566*********************99887777888887 PP - CS B3 98 r 98 r XP_023534326.1 377 R 377 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MTDFSAFRTG YLKRKMPRPY FHKLVLSSTI QARKLRIPES FLRMIRDDLS AVATLTVPDG 60 HVWRVGLRKA DNKFWFEDGW HGFLEHYSIR VGFLLVFRYE GNSSFCIFIF NLNTSEINYQ 120 SAALGGNQRN NYSIQNRIFE EMEDYDIPEA IPSNQPLNSG FLRNKLFGDE WNLHQSKSAS 180 TLQSKYLPTR DIGVQFSAVE VKKSADEVRF QNLGDDAHRI KKSGGKKRKL DSSEHRPSAH 240 SEDFGDNRFR FYESASARKR TVTAEERERV VNGAKAFEPA NPFCRVVLRP SYLYRGCIMY 300 LPSCFAEKNL SGVSGFIKLQ TPDGRQWPVR CLYKVGRAKL SQGWYEFCLE NNLGEGDVCV 360 FELLRVREIV LKVTMFRVIE DARRMVNPNP PSMMNPHSLQ SASQIKLIRN

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MTDFSAFRTG YLKRKMPRPY FHKLVLSSTI QARKLRIPES FLRMIRDDLS AVATLTVPDG  60
HVWRVGLRKA DNKFWFEDGW HGFLEHYSIR VGFLLVFRYE GNSSFCIFIF NLNTSEINYQ  120
SAALGGNQRN NYSIQNRIFE EMEDYDIPEA IPSNQPLNSG FLRNKLFGDE WNLHQSKSAS  180
TLQSKYLPTR DIGVQFSAVE VKKSADEVRF QNLGDDAHRI KKSGGKKRKL DSSEHRPSAH  240
SEDFGDNRFR FYESASARKR TVTAEERERV VNGAKAFEPA NPFCRVVLRP SYLYRGCIMY  300
LPSCFAEKNL SGVSGFIKLQ TPDGRQWPVR CLYKVGRAKL SQGWYEFCLE NNLGEGDVCV  360
FELLRVREIV LKVTMFRVIE DARRMVNPNP PSMMNPHSLQ SASQIKLIRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-141	B3 family protein