PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023534448.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 359aa    MW: 39314.3 Da    PI: 6.909
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023534448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31023.3e-3258162199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_023534448.1  58 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSTNEKGLLLNFEDRHGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDVVSFQRGvGEiGR 152
                     89***************************966778999*************************************************66699999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_023534448.1 153 DRLYIDWRRR 162
                     9999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MDFGFNSLQN HHIRSRNGLN LEPAEEASSA AVDFDGGGGG GGGGGGGGGG EVEREHMFDK  60
VVTPSDVGKL NRLVIPKQHA ERFFPLDSST NEKGLLLNFE DRHGKSWRFR YSYWNSSQSY  120
VMTKGWSRFV KEKRLDAGDV VSFQRGVGEI GRDRLYIDWR RRPELPIDHH HHHHHHHPIG  180
IRPSIVMPTT AWGSLVWQPL GVTATGYHHP ATVAPQDHTH ISRINNNNNN SSNVNVMYDR  240
NRGYCPYGYG SVESSSSSEM VFFGRASRLG DGLEGKNEMQ PEYMSSSGGG GGGGGGGGGS  300
MAVQESYSEE DTPVKRSRLR LFGVNMEMEC PIMSSSSDEC DLLLSSSSNS NPKTTAPSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-68B3 family protein