PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534576.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 229aa MW: 25506.6 Da PI: 8.5091

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534576.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.8e-14	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l + + +G +W++++ + g+ R +k+c++rw +yl XP_023534576.1 16 KGLWSPEEDQRLRNFILNHGHACWSSVPLKAGLERNGKSCRLRWINYL 63 678*******************************************97 PP
2	Myb_DNA-binding	49.1	1.3e-15	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E++ ++ ++++lG++ W+ Ia++++ gRt++++k+ w++yl XP_023534576.1 69 RGTFSQQEQDTIISLHHMLGNK-WSQIAQHLP-GRTDNEVKNLWHSYL 114 899*****************.*****.**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MGRETASHKA KPKHRKGLWS PEEDQRLRNF ILNHGHACWS SVPLKAGLER NGKSCRLRWI 60 NYLRPGLKRG TFSQQEQDTI ISLHHMLGNK WSQIAQHLPG RTDNEVKNLW HSYLKKRVEK 120 QGCSAHSTAS TTSDSADSSI TAQSMDSPKP KLLFAEWLAG AGIGFGQSFS SVHEGTGDLN 180 GTHLEGGGLG SEIQNNGFMM DSHMKFEDQI CNGNYDCVDQ LLHFGNGFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	4e-58	MYB family protein