PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023534652.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 269aa    MW: 29448.2 Da    PI: 7.0088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023534652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.86.8e-20954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_023534652.1  9 KGPWSPEEDEALQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 54
                     79******************************.***********985 PP
2Myb_DNA-binding50.83.8e-1663105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T eEde +++a +++G++ W++Iar +  gRt++ +k++w++ 
   XP_023534652.1  63 PFTLEEDETIINAQALYGNK-WAAIARLLS-GRTDNAIKNHWNST 105
                      89******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MAKQLDRIKG PWSPEEDEAL QRLVQKHGPR NWSLISKSIP GRSGKSCRLR WCNQLSPQVE  60
HRPFTLEEDE TIINAQALYG NKWAAIARLL SGRTDNAIKN HWNSTLKRKC SSMADESGGC  120
YTSSPPLKRS VSAGHSPSGS DVSDSGFFPA VSSPHVYRPV ARTGGVVPPV ETVSSSNDDP  180
ETLLSLSLPG AESSERGIWM LPATGEKEER SSNRLECFSP ELMAVMQEMI RKEVRNYMDG  240
LMEQNVSGGV CFQEAAAAGG FRNVVGLID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-88MYB family protein