PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023534708.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 169aa    MW: 18817.4 Da    PI: 9.1747
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023534708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY216.49.1e-6761585169
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                      +se+vCyv+CnfCntilavsvP +s+f++vtvrCGhCt+llsvn+  + q+l+ ++    + +++    l + e++ k   +++++ s+  s  
  XP_023534708.1   6 MASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCTNLLSVNMGASLQVLPPQEG---HKQPQ----LTSPEDSSKDRGSSSSKCSKIGSL- 92 
                     689**************************************************99985...22222....222222222222222222222222. PP

           YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                        e+ +++  r+pp irPPekrqr+Psaynrfik eiqrika+nPdishreafs+aaknWah+P+ih g
  XP_023534708.1  93 ---ESAERDQHRIPP-IRPPEKRQRIPSAYNRFIKAEIQRIKANNPDISHREAFSTAAKNWAHLPHIHLG 158
                     ...344555566667.9***************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MSLDMMASER VCYVHCNFCN TILAVSVPCN SMFTLVTVRC GHCTNLLSVN MGASLQVLPP  60
QEGHKQPQLT SPEDSSKDRG SSSSKCSKIG SLESAERDQH RIPPIRPPEK RQRIPSAYNR  120
FIKAEIQRIK ANNPDISHRE AFSTAAKNWA HLPHIHLGQK LDGNNKQSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-70YABBY family protein