PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023534778.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 196aa    MW: 21268.3 Da    PI: 8.5833
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023534778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.7e-39231231100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf++eq +++fa++hk+FGasnv+kll ++p  +r +a+ s++yeA+ar+rdPvyG+v+++++lqqq++ l+++l
  XP_023534778.1  23 PCGACKFLRRKCAPDCIFAPYFCSEQsAARFAAIHKVFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQL 117
                     7***********************9978******************************************************************* PP

          DUF260  95 allkee 100
                      +++++
  XP_023534778.1 118 MQARAQ 123
                     999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MASSTTANSH VSASASASPS PSPCGACKFL RRKCAPDCIF APYFCSEQSA ARFAAIHKVF  60
GASNVSKLLL HVPVPHRCEA VVSIAYEAQA RIRDPVYGCV AHLFALQQQV AYLQTQLMQA  120
RAQLAQTHMQ IQWTGIPKFP NYQSQVTNSA VSPQTSLESA ANNDEAQFQQ FPTKIPASCH  180
GDVGELQALA LRMMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-66LBD family protein