PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023534789.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 309aa    MW: 33911.5 Da    PI: 8.8568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023534789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-125195147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_023534789.1 51 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 95
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MVSNNPNPSE GFYLDPSGMA LPGLGPFATT MAASEDMSKK IRKPYTITKS RESWTEPEHD  60
KFLEALQLFD RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KTGGGEHLPP PRPKRKAAHP  120
YPQKASKNVA MPSQVSGSFP STSPLVEPGC IRRPESSSIP ACPATGGAVS SWMVNSVQPP  180
NSAQVPTTTN ICCSSTESPS KARPLVETTD QGSNNHSLRV LPDFAQVYSF IGSVFDPNTS  240
GHLQKLKRMD PIDVETVLLL MRNLSINLIS PDFEDHRKLL SSYEIDSGPI PHGDINKYVT  300
DHKPSLVSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-115MYB_related family protein