PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534800.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27752.7 Da PI: 9.0166

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.4	2.9e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_023534800.1 9 KRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	96	5.9e-32	84	174	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ea + s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL+ slk+iRs++++++l+q+ +lq+ke+ l+++n++L+++l XP_023534800.1 84 TREALEVSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLV 174 456667789******************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGVLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPEA NVSTREALEV SSQQEYLKLK ARYEALQRSQ RNLLGEDLGP 120 LSSKELESLE RQLDMSLKHI RSTRTQYMLD QLTDLQRKEH LLNDANRTLK QRLVEGYQVN 180 ALQLNQSGDD MMYGRHQAHP PPDAFFHLLD AEPTLQIGYH PDPLTVVTAG PSMNNFLPGW 240 LP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-121	MIKC_MADS family protein