PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534806.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Nin-like

Protein Properties

Length: 964aa MW: 106623 Da PI: 6.6508

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.7e-29	564	615	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_023534806.1 564 AEKSISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 615 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence
MTEPKPDSDH ISSFFPKSHR SGADDRNPLM DFDLDLDIPW PLDQTPLFST SDHLASPLWA 60 FSEADDGDDS KFAAYACSVL GTSNLNSVPQ KPIENHKFKI LPVPSENPDG YCLIKEKMAQ 120 ALRYIKDLSD QQVLAQVWAP VKNGDKVVLS TSGQPFVLDT QSNGLHRYRL VSLTYMFSLD 180 TELDGSLGLP GRVFQQKLPE WTPNVQYYSS KEYSRLRHAL DYNVQGTLAL PVFDPSGQSC 240 LGVLELIMTS PRINYAPEVD KVCKALQAVN LKSSEILDRP NIQICNEGRQ NALAEILAVL 300 TVVCETHNLP LAQTWVPCRH RNVLANGGGL KKSCTSFDGS CMGRICMSAT EVASYVVDAH 360 KWGFREACLE HHLQKGQGVS GRAFSSHSSC FCGDITQFCK NEYPLVHYAL MFGLKSCFSI 420 CLRSKFTGDD EYILEFFLPP SLVDYQEQKT LLGAMMATMK QHFYTLKVAS GIKLEEGGIV 480 EVVQASRNGG FESRLECIHI PPESDAMPNT GEVVALETLQ QRSLMVHDAP KDENNTVRDR 540 ESDNPVPCVQ KEVKKTSKRK RGKAEKSISL DVLQQYFAGS LKDAAKSLGV CPTTMKRICR 600 QHGISRWPSR KINKVNRSLS KLKRVIDSVQ GNEGTFGMSS LATSPLPVAV SSSSHPLTPD 660 GSNQNFFFAS QPSDPQRKET NTSEAQTNNT QARLKDQLHR GVSNPEELFH EQNGSLMKLG 720 NGFNNFRTGS GSRDESTGTP TSHGSCQGSP ANESNPLSIH HQEQCVRRGS PEAAAFHPID 780 KPNTSTRACP VPDTLLTVEP KEPFGGMLIK DAGSSKDLKN LCTSVADAVL DDQVPKFCWP 840 RPSDIAMRQP MESVCHTVPH ISARQEPSRM TIKATYKDDI IRFQISTCTG IVELREEVAK 900 RLKLDVGTFD IKYMDDDREW VLTACDADLQ ECVDISKASG SNIIRLLVHD LSVNLGSSCE 960 STRE

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence

MTEPKPDSDH ISSFFPKSHR SGADDRNPLM DFDLDLDIPW PLDQTPLFST SDHLASPLWA  60
FSEADDGDDS KFAAYACSVL GTSNLNSVPQ KPIENHKFKI LPVPSENPDG YCLIKEKMAQ  120
ALRYIKDLSD QQVLAQVWAP VKNGDKVVLS TSGQPFVLDT QSNGLHRYRL VSLTYMFSLD  180
TELDGSLGLP GRVFQQKLPE WTPNVQYYSS KEYSRLRHAL DYNVQGTLAL PVFDPSGQSC  240
LGVLELIMTS PRINYAPEVD KVCKALQAVN LKSSEILDRP NIQICNEGRQ NALAEILAVL  300
TVVCETHNLP LAQTWVPCRH RNVLANGGGL KKSCTSFDGS CMGRICMSAT EVASYVVDAH  360
KWGFREACLE HHLQKGQGVS GRAFSSHSSC FCGDITQFCK NEYPLVHYAL MFGLKSCFSI  420
CLRSKFTGDD EYILEFFLPP SLVDYQEQKT LLGAMMATMK QHFYTLKVAS GIKLEEGGIV  480
EVVQASRNGG FESRLECIHI PPESDAMPNT GEVVALETLQ QRSLMVHDAP KDENNTVRDR  540
ESDNPVPCVQ KEVKKTSKRK RGKAEKSISL DVLQQYFAGS LKDAAKSLGV CPTTMKRICR  600
QHGISRWPSR KINKVNRSLS KLKRVIDSVQ GNEGTFGMSS LATSPLPVAV SSSSHPLTPD  660
GSNQNFFFAS QPSDPQRKET NTSEAQTNNT QARLKDQLHR GVSNPEELFH EQNGSLMKLG  720
NGFNNFRTGS GSRDESTGTP TSHGSCQGSP ANESNPLSIH HQEQCVRRGS PEAAAFHPID  780
KPNTSTRACP VPDTLLTVEP KEPFGGMLIK DAGSSKDLKN LCTSVADAVL DDQVPKFCWP  840
RPSDIAMRQP MESVCHTVPH ISARQEPSRM TIKATYKDDI IRFQISTCTG IVELREEVAK  900
RLKLDVGTFD IKYMDDDREW VLTACDADLQ ECVDISKASG SNIIRLLVHD LSVNLGSSCE  960
STRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein