PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534983.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 35010.8 Da PI: 6.9966

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.1e-18	85	138	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_023534983.1 85 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 138 456899***********************************************9 PP
2	HD-ZIP_I/II	130.5	6.4e-42	84	175	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k++ne+L++++++L++e++ XP_023534983.1 84 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIM 175 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MTSNGMAFFP ANFMLQTSHE DHDHHHHSSP PSLNPILPSC TSQDFHGVAS FLGKRSMSFS 60 GAEMVEEGNN GEDEFSDDGS QAGEKKRRLN MEQVKTLEKN FELGNKLEPE RKMQLARALG 120 LQPRQIAIWF QNRRARWKTK QLEKDYDLLK RQFEAIKSDN EALKSQNQKL QAEIMGLKSR 180 EPTESINLNK ETEGSCSNRS ENSSDNIKLD ISRTPAIDSP HQHQHPTNRP LFPTSSLRPP 240 ALAQLFQTSS RSSDPPKQLD NNNHHHHHHH HHQMPKEENT SLSNMFCGMD DHSGFWPWLE 300 QQHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-122	HD-ZIP family protein