PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023535232.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family bHLH
Protein Properties Length: 239aa    MW: 26095.2 Da    PI: 5.4784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023535232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-13175220655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+e++P+     +k  + a++Le+AveY+k Lq
  XP_023535232.1 175 SIAERVRRTRISDRIRKLQEVVPNM----DKQTNTADMLEEAVEYVKFLQ 220
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MQSTTGGATG SRSGGGGSGG GLARFRSAPA AWLEALLEDE EEDLLRPNQC LTQLLAGNSS  60
DLDSPADQAL FEPNPSAGFQ RQNSSPAEFL GASGIGEGFY SSYAINSSAA LEISPTSKRG  120
REVDAQNFPP KFSPQLKREG SGVSSLIDME MEKLLEDSVP CRVRAKRGCA THPRSIAERV  180
RRTRISDRIR KLQEVVPNMD KQTNTADMLE EAVEYVKFLQ KQIQELTEHQ RRCTCTVKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-70bHLH family protein