PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023535295.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92693 Da    PI: 5.8087
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023535295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182280357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_023535295.1 22 KYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECpilsDIEPKQIKVWFQNRRCREKQ 80
                    5679*****************************************************97 PP
2START176.31.9e-551663732204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+s+g  g+++l 
  XP_023535295.1 166 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDWPSWFRDCRAVDVLNVLSTGngGTIELL 259
                     7899******************************************************.9999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+l Sg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_023535295.1 260 YMQLYAPTTLAPaRDFWLLRYTSILEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLSSGYLIRPCEGGGSIIHMVDHMDLEPWSVPEVLRPLY 354
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     ks++  ++k+++a+l+ ++
  XP_023535295.1 355 KSSTLLAQKNTMAALRLLR 373
                     ***************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MMAVTSACKD SATKISSLDN GKYVRYTPEQ VEALERLYYE CPKPSSMRRQ QLIRECPILS  60
DIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNRL LMEENDRLQK QVSQLVYENS  120
YFRQQTQNAT LATTDTSCES VVTSGQQNLT PPHPPKDASP AGLLSIAEET LAEFLSKATG  180
TAVEWVQMPG MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK DWPSWFRDCR  240
AVDVLNVLST GNGGTIELLY MQLYAPTTLA PARDFWLLRY TSILEDGSLV VCERSLNNTQ  300
NGPSMPPVQN FVRAEMLSSG YLIRPCEGGG SIIHMVDHMD LEPWSVPEVL RPLYKSSTLL  360
AQKNTMAALR LLRQISQEVS QPNVTGWGRR PAALRALSQK LSRGFNEAVN GFTDEGWSLL  420
ENDGIDDVTL LVNMSHGKTM MGANMSYSNG FPSMSNAVLC AKASMLLQNV TPAMLIRFLR  480
EHRSEWADSS IDAYSAAAIK TGQCGLPGSH AGTFGGQIIL PLAQTVEHEE FMEVVKFENV  540
SHYRDDKLMP GDIFLLQLCN GVDENTVGTS AELIFAPIDA SFSDDAPILP SGFRIIPLDS  600
GMDASSPYRT LDLASALDVG PAGNRASGDC AGQSGKSKSV MTIAFQFVFD VHLQDNVAAM  660
ARQYVRSIIA SVQRVALALS PSNFGPHANL QTPAGAPEAQ TLALWISQSY RCFMGMELLK  720
NEGRESILKS LWHHTDAVMC CSLQALPNFT FANQSGLDML ETTLVALQDI TLEKIFDDNG  780
KKTLASEFPR IMQQGFICLQ GGICLSSMGR AISYDKAVAW KVLNEEENAH CICFMFMNWS  840
FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein