PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023535350.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 236aa MW: 27456.9 Da PI: 10.839

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023535350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.5e-17	20	65	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++vkq+G +W+ Ia++++ gR++k+c++rw++ XP_023535350.1 20 RGHWRPTEDEKLRRLVKQYGAQNWNFIAEKLQ-GRSGKSCRLRWFNQ 65 899***************************.*********996 PP
2	Myb_DNA-binding	59.9	5.4e-19	72	115	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ XP_023535350.1 72 RRPFTEEEEERLLTAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 115 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MDGLLVSAST SGDDTKSCSR GHWRPTEDEK LRRLVKQYGA QNWNFIAEKL QGRSGKSCRL 60 RWFNQLDPRI NRRPFTEEEE ERLLTAHRIH GNKWALIARL FPGRTDNAVK NHWHVIMARK 120 QRQQSNFSAT KLNFPEFFIG SKSSPTASAI ARTRTHGGGC GGGLFRRFWE HQNPNNQWNN 180 SLFPHFPSSL FLRWYQSSLD LRNFKDNRSK SINFEISNES VEKKDIKFID FLGVES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	8e-67	MYB family protein