PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023535357.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 280aa MW: 30809.6 Da PI: 8.4163

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023535357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_023535357.1 14 KGAWTKDEDQRLIDYIRLHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	57	4.3e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ XP_023535357.1 67 RGNFTQDEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MGRSPCCEKA HTNKGAWTKD EDQRLIDYIR LHGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TQDEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHRPLN EPTAVSTRLP YRNPNNSSSS SSSVPTAELP IPKPATINVQ SSEVDEEGSG 180 TTTEMEPPLP TAASTAEAHV KTELNLELSI GLQPFQAEAT RGSLGSSAES RLRDRRSFGS 240 VCLCWQLGSE NSGGGGECCR NCESSYGWVF GIRASALGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-96	MYB family protein