PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023535686.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 574aa    MW: 64681.2 Da    PI: 9.5824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023535686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-1623108899
                     -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s++l+s rl lp kf+  + +++  +   +tl  +sg++W v+l   ++ +  ++ +GW  F++++ L+ gDf+vF++dg+  f  +v++f++
  XP_023535686.1  23 SSTLSSERLKLPSKFI-GYlEEIIVR--SVTLIGPSGQTWLVNL--IQQNDDLFFCDGWPTFARDHALDCGDFLVFRYDGELHF--TVQIFDE 108
                     788999*********9.565655445..5***************..77777899999*********************996666..9999986 PP
2B349.48.5e-16221312498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++ +v  s  l +p +f  +h   + ++ +l+l +++g+sW+v+    ++   +++l +GW  Fv+ n+++ gD++vF+l+++ e   +v++f
  XP_023535686.1 221 IMKRFNVRGSYTLNIPYQFSMAHL--PSCKLKLVLHNLKGESWTVNSVPtTRVNTSHTLCGGWMAFVRGNDVNMGDICVFELVRHCEL--RVHIF 311
                     56666677778899*****98995..458889**************955555556699************************985555..99999 PP

                     - CS
              B3  98 r 98 
                     r
  XP_023535686.1 312 R 312
                     8 PP
3B346.75.7e-15454542596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +++ +++ s  l +p +f ++h  +  + ++++l  ++g +W v+    + ++ ++++ +GW +Fv++ng++  D+++F+l+g+ e   +v++
  XP_023535686.1 454 MKKFNTSGSYTLKIPHQFSSAHFPN--SRTEIILHGPNGGRWIVNSVPdSMGRMMHTFCGGWMSFVRDNGIQMEDICIFELIGKCEL--LVHI 542
                     5455556667799*********744..5679***************6545555559999***********************95444..6665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    
MMGTESRREM VTARRPCFYA FYSSTLSSER LKLPSKFIGY LEEIIVRSVT LIGPSGQTWL  60
VNLIQQNDDL FFCDGWPTFA RDHALDCGDF LVFRYDGELH FTVQIFDEST CEKEGAFHSQ  120
CSQDNTGHKR DREEDNSSPQ TCAEAVAKKM RSIFYVHSEC RENLAAIRTV EVHKNGTGQN  180
GISKVDDVTT QDKILALSLS FQDEKKVSQS FSSNFPYFVR IMKRFNVRGS YTLNIPYQFS  240
MAHLPSCKLK LVLHNLKGES WTVNSVPTTR VNTSHTLCGG WMAFVRGNDV NMGDICVFEL  300
VRHCELRVHI FRVGKEISED QSGKGTLNRL GAGHAVIPRK ALKGLPKKMN GNSLKVHSKR  360
SKRIEIHDKK CLNSWQEPFC NDARKHSSAK KVSTKVMVCS QSKKPSKRLV NRRTSVKGDL  420
VLPARLGLRA MVARDEERAA KSFVSVFPSF VRIMKKFNTS GSYTLKIPHQ FSSAHFPNSR  480
TEIILHGPNG GRWIVNSVPD SMGRMMHTFC GGWMSFVRDN GIQMEDICIF ELIGKCELLV  540
HITGVGKKGF DLSSEVTTCS ELAIVPTTSN DPSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-18B3 family protein