PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023535865.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ERF

Protein Properties

Length: 376aa MW: 41963.7 Da PI: 4.6277

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023535865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.2	8.2e-18	69	119	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p r r +lg+f a eAa a+++a++ ++g XP_023535865.1 69 CKYRGVRQRT-WGKWVAEIREPD----RgSRLWLGTFSNAIEAALAYDEAARTMYG 119 79***999.******82....34*********************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MTVEIVQRKR KSRSRRDPST VAETLAKWKA YNECVNSCDD GSKPIRKAPA KGSKKGCMKG 60 KGGPMNSNCK YRGVRQRTWG KWVAEIREPD RGSRLWLGTF SNAIEAALAY DEAARTMYGQ 120 TARLNLPNIT NTRLLAGSAS DSSTTTSTTT TSSNQSDVCV SEELTLTPQP VPPDVKIEGE 180 PRTGFPVDHV ATSAIDAKFC DQGNDQAALL GIEFPSLDHF PNFQMDEMFE LRTNDIAMPV 240 SLEKKVKHES VDGEYPDRNS DPFDIQDVLQ DFQIDEMFDV EELLSIINSD SMHDQSFLQG 300 NVYDSNNMVP PQPSSLSNQF RYPDEKLLGS LQHMEQAPAD VNHGFDFLKE GREEDLNATT 360 DDFARYLNYE MGGLGF

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MTVEIVQRKR KSRSRRDPST VAETLAKWKA YNECVNSCDD GSKPIRKAPA KGSKKGCMKG  60
KGGPMNSNCK YRGVRQRTWG KWVAEIREPD RGSRLWLGTF SNAIEAALAY DEAARTMYGQ  120
TARLNLPNIT NTRLLAGSAS DSSTTTSTTT TSSNQSDVCV SEELTLTPQP VPPDVKIEGE  180
PRTGFPVDHV ATSAIDAKFC DQGNDQAALL GIEFPSLDHF PNFQMDEMFE LRTNDIAMPV  240
SLEKKVKHES VDGEYPDRNS DPFDIQDVLQ DFQIDEMFDV EELLSIINSD SMHDQSFLQG  300
NVYDSNNMVP PQPSSLSNQF RYPDEKLLGS LQHMEQAPAD VNHGFDFLKE GREEDLNATT  360
DDFARYLNYE MGGLGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	12	QRKRKS
2	10	17	RKSRSRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	2e-39	ERF family protein