PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023535944.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 202aa MW: 22031.1 Da PI: 8.722

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023535944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.8e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+ + p++q++++ +++k+FG+s +l++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++ql XP_023535944.1 2 SCSGCRVLRKGCNEACVLRSSLhwirsPEAQANATLFLAKFFGRSDLLSFIAAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQL 96 6********************************************************************************************** PP DUF260 91 kaelal 96 +a+++l XP_023535944.1 97 AADTVL 102 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MSCSGCRVLR KGCNEACVLR SSLHWIRSPE AQANATLFLA KFFGRSDLLS FIAAVPHHQR 60 PALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCQLAADT VLSGGVLRPI PGIELSGNPT 120 RNVDDSTLTF NTDVWTTTAQ NLQLYPSTPS DFRCLPDLAV AAGRAKNHTL ENRRSLDSED 180 SIMTSFGSGD RRKQRKLLNL FI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	197	DRRKQRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-57	LBD family protein