PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023535974.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family Trihelix
Protein Properties Length: 594aa    MW: 67642.6 Da    PI: 5.8827
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023535974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.64e-2964148187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r+++ k+plWe+vs+k+ e g++rs+k+Ckek+en+ k++k+++e +++  +++s+t+++f+qlea
  XP_023535974.1  64 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEQVSRKLVELGYHRSAKKCKEKFENVYKYHKRTREVRSG--KPDSKTYKFFEQLEA 148
                     8********************************************************************9..58999********85 PP
2trihelix101.18.9e-32412497187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+++e +++++  k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+a
  XP_023535974.1 412 RWPKVEVEALIKLRTNLEAKYQENVPKGPLWEEISSAMKRIGYNRNAKRCKEKWENINKYFKKVKETRKTR-PEDSKTCPYFHQLDA 497
                     8********************************************************************97.99***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    
MLGESTTSVL GGGAAVPETN HCHDEVIGDM GVAAAAAEEE INNNSGEEER RRRDDGDRSF  60
GGNRWPRQET LALLKIRSDM DVAFRDASVK GPLWEQVSRK LVELGYHRSA KKCKEKFENV  120
YKYHKRTREV RSGKPDSKTY KFFEQLEALE NHPPFNFNPP PPPPPPPPPP PPSTTVIPTV  180
PSTTTLPHLM NISFSQPNPT IHHLPSPPAP FNNPTTSSVP VGFLEADLIS NSTSDDVDDS  240
STSSDEAPRR RTKKRKWKEF FERLMKEVIQ KQVEMQKRFL EAIEKREQER IVREEAWRIQ  300
EMAKINRERE ILAHERSMAA SKDAAITSFL QKITESQQNN NNHNNNLSRT PPPLPQQQPI  360
PMSNPTPVVQ PPPPPPPSST LQVVLPQKME IMKMDHNGRE NYTMSPSSSS SRWPKVEVEA  420
LIKLRTNLEA KYQENVPKGP LWEEISSAMK RIGYNRNAKR CKEKWENINK YFKKVKETRK  480
TRPEDSKTCP YFHQLDALYR EKGGGNNNNN NNRKLELENI GSSTMIPLMV QPEQQWPPQQ  540
EITRPDSGNE EMESEPMDRD DKDDDDDDDE EEEDEGGGNY EIVASKPTSV STAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERRRRD
2248256PRRRTKKRK
3250256RRTKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-134Trihelix family protein