PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023535988.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 415aa MW: 47584.6 Da PI: 7.5934

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023535988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	160	183	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H XP_023535988.1 160 YVCGVCGRKCKTNLDLKKHFKQlH 183 9******************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MNSTTFVCNP MDALPLLPSS QLLFPNNAIN FRHRISIRVK PTSHGSCRWR IRATAENGAS 60 SASTSQIDMV RNREGVFTAK QSKVVVLWDL DNKPPRGPPY EAAMALKRVA QRFGQVVDMS 120 AYANRHAFIH LPQWVVEERR ERRQLDILER KGLFTPSESY VCGVCGRKCK TNLDLKKHFK 180 QLHERERQKK LNRMRSLKGK KRQRYKEKFV SGNHKYNEAA RSLITPKVGY GLASELRRAG 240 VFVKTVEDKP QAADWALKRQ MQHSMSRGID WMFLVSDDSD FSEMLRKAKE ANLGTVVVGD 300 RDRALGRHAD LWVPWMGVEN GDVTEEDLVP KRWRTRRTEE DLDEDDGFSV SRYYGEAESG 360 SDLESVVQEL ASASTEFNGF RISAFSEGED DDEWVEEDVA SDYLLEMSDE EDGYF

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MNSTTFVCNP MDALPLLPSS QLLFPNNAIN FRHRISIRVK PTSHGSCRWR IRATAENGAS  60
SASTSQIDMV RNREGVFTAK QSKVVVLWDL DNKPPRGPPY EAAMALKRVA QRFGQVVDMS  120
AYANRHAFIH LPQWVVEERR ERRQLDILER KGLFTPSESY VCGVCGRKCK TNLDLKKHFK  180
QLHERERQKK LNRMRSLKGK KRQRYKEKFV SGNHKYNEAA RSLITPKVGY GLASELRRAG  240
VFVKTVEDKP QAADWALKRQ MQHSMSRGID WMFLVSDDSD FSEMLRKAKE ANLGTVVVGD  300
RDRALGRHAD LWVPWMGVEN GDVTEEDLVP KRWRTRRTEE DLDEDDGFSV SRYYGEAESG  360
SDLESVVQEL ASASTEFNGF RISAFSEGED DDEWVEEDVA SDYLLEMSDE EDGYF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	180	RRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-162	C2H2 family protein