PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536068.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 236aa MW: 27064.8 Da PI: 8.6561

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.6	1.4e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKAeEL +LCda+v viifsst+klyeyss XP_023536068.1 10 RIDNSTSRQVTFSKRRSGLLKKAEELAILCDADVGVIIFSSTNKLYEYSS 59 8***********************************************96 PP
2	K-box	86.3	6.1e-29	80	170	8	98
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++ +++q+e+a L++++++L +++R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ iR kK+++l+++i++l +k + ++++n++L kk+ XP_023536068.1 80 GNSTSEVKYWQREAAMLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGIRMKKDKILMDEIQDLNRKVNLIHQDNTELYKKV 170 3788999*********************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MGRCKIVIRR IDNSTSRQVT FSKRRSGLLK KAEELAILCD ADVGVIIFSS TNKLYEYSSS 60 SMKTLIERYN KTKEEHHQLG NSTSEVKYWQ REAAMLRQQL QSLHENHRQM MGEELTGLSV 120 KDLQNLENQL EISLRGIRMK KDKILMDEIQ DLNRKVNLIH QDNTELYKKV NLIRQENLEL 180 HEKVYGTKDA NGAHISSLTN GLSVGEDAGI PIDLQLSQPQ PQDHEAPERA TKLGRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-101	MIKC_MADS family protein