PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536090.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 317aa MW: 35763.3 Da PI: 4.6942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.2e-12	152	195	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A+eY+k+L XP_023536090.1 152 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYVKEL 195 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MELNEHYLFE ELLAFKREIN WEFAMPTDIN AWNFDCSDSM PMDELNLSYL LNGQGQYSFP 60 ADQFTAAAAA AAASTGDSMS FEVYNGEYPI MNMEEEELGI LEDEIHNLEV QANCKVEAVQ 120 SPEEIVPNAG DFGPKVVNSN RKKLQGQPSK NLMAERRRRK RLNDRLSMLR SIVPKISKMD 180 RTAILADAIE YVKELVEKIK NLQREIEAGN DPNKLGILRD LKRNEYLVRN SAKFNVERRA 240 GETGIEICCA AKPGLLLSTV QTLEALGLDI QHCVISCFND FAIQASCSXG EEQRRRMSTE 300 EVKQALFQNT GYGGRCP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	161	RKKLQGQPSKNLMAERRRRKR
2	155	162	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-75	bHLH family protein