PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023536122.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 276aa    MW: 31563.9 Da    PI: 9.0679
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023536122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s
  XP_023536122.1  9 KRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 59
                    79***********************************************86 PP
2K-box89.94.8e-3071169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g++l+ ++++++q++l+kLk+ +++L+r++ +++Ge++++Ls++eL+ Leq+++++++ iR++K++++ +qie+ +kk k++ e++k+L 
  XP_023536122.1  71 YQKTLGVDLWISHYQRMQENLKKLKDVNRSLRRQIMQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLL 165
                     7899999***************************************************************************************9 PP

           K-box  96 kkle 99 
                     ++++
  XP_023536122.1 166 QEFD 169
                     9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MARGKIQIKR IENPTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMFSS TGKLHEYISP  60
STSTKELFDQ YQKTLGVDLW ISHYQRMQEN LKKLKDVNRS LRRQIMQRMG ECMNDLSFEE  120
LRCLEQDMDN AVRIIRERKY RVISNQIETH KKKLKSVGEI HKSLLQEFDI ATEEDPHYGL  180
VDNGGVGVGV GVGVGVGVGV GGGDYESVMG YHPGGAHPRI FALRLQPNHP NIHLQHPPPP  240
DLTTYPLLEX FFFFFSSFLP HNLKDIECRN GKEFEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-88MIKC_MADS family protein