PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536300.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Nin-like

Protein Properties

Length: 917aa MW: 102170 Da PI: 6.6613

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.6e-29	594	643	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ XP_023536300.1 594 KTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 643 89**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence
MEDCMLSPAT MLDAPAEAAM DLDYMDGLLL EGCWLETAEG TEFLHPSTAS FGANLDPLIA 60 WPATDMNGDF HMSQITRTNQ EEPRRILTDE ASMGRGRVDM EQEGCSGQSE NHGFEGSELC 120 RRLWIGPGDH LGSASSVMEK LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF 180 SQNSSCTRLS KYRDVSVKYE FTADDDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV 240 NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELESVCKAL EAVKLRSSDV 300 IGHPDKKQVF NRSNEAVLQE IQNTLKSACE THGLPLAQTW ASCIQQNREG CRHSDENYSC 360 CVSTVDRACF VADPRVQEFH EACSEHHLLK GEGIVGMAFK SNEPCFSSDI TSFCNTEYPL 420 SHHAKLFGLH AAVAIRLRCI YINKTDFVLE FFLPVDCIDP EEQRVLLTSL STIIQRSCRS 480 LRLVNDKECR EENMQQSCRR SKVEHHQLEI SHPTNSLLTS SVQNIQQQSG FVSLFQDGKT 540 SEMLSSSGYQ HHELNYNLNG VVEDSEECAT VGNSCFSDTG LGRTGEKRRT KVDKTITLQV 600 LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIKRWPSRKI KKVGHSLQKL QLVIDSVEGA 660 SGAFQIGSLY SNFQDLASPN LSGSGSGPVV SAKMGDCMKT SSNPNEVGMS NLQGGGASKS 720 PSSSCSQSSS SNQCFSSRSH KNVGHWNKGG SEDQMGGGEN PCDGELKRVK SEVEIHVSIM 780 EGSNIPRRSQ SCKSLCKHPA TECLVHSAKE GDGMAERVEV QKVKVSYGEE KIRFRVHNQW 840 RYEELLNEVG KRFSISDMTK FDLKYLDDES EWVLLTSDTD LQECFHVYKS CRIQTIRLLV 900 QESRRRKRNC VASGGFS

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence

MEDCMLSPAT MLDAPAEAAM DLDYMDGLLL EGCWLETAEG TEFLHPSTAS FGANLDPLIA  60
WPATDMNGDF HMSQITRTNQ EEPRRILTDE ASMGRGRVDM EQEGCSGQSE NHGFEGSELC  120
RRLWIGPGDH LGSASSVMEK LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF  180
SQNSSCTRLS KYRDVSVKYE FTADDDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV  240
NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELESVCKAL EAVKLRSSDV  300
IGHPDKKQVF NRSNEAVLQE IQNTLKSACE THGLPLAQTW ASCIQQNREG CRHSDENYSC  360
CVSTVDRACF VADPRVQEFH EACSEHHLLK GEGIVGMAFK SNEPCFSSDI TSFCNTEYPL  420
SHHAKLFGLH AAVAIRLRCI YINKTDFVLE FFLPVDCIDP EEQRVLLTSL STIIQRSCRS  480
LRLVNDKECR EENMQQSCRR SKVEHHQLEI SHPTNSLLTS SVQNIQQQSG FVSLFQDGKT  540
SEMLSSSGYQ HHELNYNLNG VVEDSEECAT VGNSCFSDTG LGRTGEKRRT KVDKTITLQV  600
LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIKRWPSRKI KKVGHSLQKL QLVIDSVEGA  660
SGAFQIGSLY SNFQDLASPN LSGSGSGPVV SAKMGDCMKT SSNPNEVGMS NLQGGGASKS  720
PSSSCSQSSS SNQCFSSRSH KNVGHWNKGG SEDQMGGGEN PCDGELKRVK SEVEIHVSIM  780
EGSNIPRRSQ SCKSLCKHPA TECLVHSAKE GDGMAERVEV QKVKVSYGEE KIRFRVHNQW  840
RYEELLNEVG KRFSISDMTK FDLKYLDDES EWVLLTSDTD LQECFHVYKS CRIQTIRLLV  900
QESRRRKRNC VASGGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein