PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536301.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Nin-like

Protein Properties

Length: 916aa MW: 102042 Da PI: 6.6613

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.6e-29	593	642	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ XP_023536301.1 593 KTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 642 89**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence
MEDCMLSPAT MLDAPAEAAM DLDYMDGLLL EGCWLETAEG TEFLHPSTAS FGANLDPLIA 60 WPATDMNGDF HMSQITRTNQ EEPRRILTDE ASMGRGRVDM EQEGCSGQSE NHGFEGSELC 120 RRLWIGPGDH LGSASSVMEK LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF 180 SQNSSCTRLS KYRDVSVKYE FTADDDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV 240 NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELESVCKAL EAVKLRSSDV 300 IGHPDKKVFN RSNEAVLQEI QNTLKSACET HGLPLAQTWA SCIQQNREGC RHSDENYSCC 360 VSTVDRACFV ADPRVQEFHE ACSEHHLLKG EGIVGMAFKS NEPCFSSDIT SFCNTEYPLS 420 HHAKLFGLHA AVAIRLRCIY INKTDFVLEF FLPVDCIDPE EQRVLLTSLS TIIQRSCRSL 480 RLVNDKECRE ENMQQSCRRS KVEHHQLEIS HPTNSLLTSS VQNIQQQSGF VSLFQDGKTS 540 EMLSSSGYQH HELNYNLNGV VEDSEECATV GNSCFSDTGL GRTGEKRRTK VDKTITLQVL 600 RQYFAGSLKD AAKSIGVCPT TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVEGAS 660 GAFQIGSLYS NFQDLASPNL SGSGSGPVVS AKMGDCMKTS SNPNEVGMSN LQGGGASKSP 720 SSSCSQSSSS NQCFSSRSHK NVGHWNKGGS EDQMGGGENP CDGELKRVKS EVEIHVSIME 780 GSNIPRRSQS CKSLCKHPAT ECLVHSAKEG DGMAERVEVQ KVKVSYGEEK IRFRVHNQWR 840 YEELLNEVGK RFSISDMTKF DLKYLDDESE WVLLTSDTDL QECFHVYKSC RIQTIRLLVQ 900 ESRRRKRNCV ASGGFS

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence

MEDCMLSPAT MLDAPAEAAM DLDYMDGLLL EGCWLETAEG TEFLHPSTAS FGANLDPLIA  60
WPATDMNGDF HMSQITRTNQ EEPRRILTDE ASMGRGRVDM EQEGCSGQSE NHGFEGSELC  120
RRLWIGPGDH LGSASSVMEK LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF  180
SQNSSCTRLS KYRDVSVKYE FTADDDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV  240
NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELESVCKAL EAVKLRSSDV  300
IGHPDKKVFN RSNEAVLQEI QNTLKSACET HGLPLAQTWA SCIQQNREGC RHSDENYSCC  360
VSTVDRACFV ADPRVQEFHE ACSEHHLLKG EGIVGMAFKS NEPCFSSDIT SFCNTEYPLS  420
HHAKLFGLHA AVAIRLRCIY INKTDFVLEF FLPVDCIDPE EQRVLLTSLS TIIQRSCRSL  480
RLVNDKECRE ENMQQSCRRS KVEHHQLEIS HPTNSLLTSS VQNIQQQSGF VSLFQDGKTS  540
EMLSSSGYQH HELNYNLNGV VEDSEECATV GNSCFSDTGL GRTGEKRRTK VDKTITLQVL  600
RQYFAGSLKD AAKSIGVCPT TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVEGAS  660
GAFQIGSLYS NFQDLASPNL SGSGSGPVVS AKMGDCMKTS SNPNEVGMSN LQGGGASKSP  720
SSSCSQSSSS NQCFSSRSHK NVGHWNKGGS EDQMGGGENP CDGELKRVKS EVEIHVSIME  780
GSNIPRRSQS CKSLCKHPAT ECLVHSAKEG DGMAERVEVQ KVKVSYGEEK IRFRVHNQWR  840
YEELLNEVGK RFSISDMTKF DLKYLDDESE WVLLTSDTDL QECFHVYKSC RIQTIRLLVQ  900
ESRRRKRNCV ASGGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein