PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023536339.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24543 Da    PI: 9.2809
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023536339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngi+KKA+E+ vLCda+v++++f+s+gk++ey+s
  XP_023536339.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVVFASSGKMHEYCS 59
                    79***********************************************96 PP
2K-box88.11.8e-2971168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k+sgk+l++ak+e+l++e++++kke++n+q e+R+l Ged++sL++keL+ Le++Le++l+ +R+k++el++++  + +++e+e+++ n +L 
  XP_023536339.1  71 YHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRRLRGEDITSLNYKELMALEEALENGLTGVREKQSELMKMMRTNERMMEEENKRLNYELY 165
                     8999******************************************************************************************9 PP

           K-box  96 kkl 98 
                     +k 
  XP_023536339.1 166 QKE 168
                     996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AQVSLVVFAS SGKMHEYCSP  60
STPLIDILDK YHKQSGKRLW DAKHENLSNE MDRVKKENDN MQIELRRLRG EDITSLNYKE  120
LMALEEALEN GLTGVREKQS ELMKMMRTNE RMMEEENKRL NYELYQKEMV AMGDGVDNGY  180
NQRMRDFNSQ MPFAFRVQPI QPNLQERNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-82MIKC_MADS family protein