PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536385.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 224aa MW: 24638.2 Da PI: 8.8337

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.7e-18	38	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + XP_023536385.1 38 KGPWSAEEDRVLTRLVERYGPRNWSLISRYVK-GRSGKSCRLRWCNQ 83 79***************************9.*********985 PP
2	Myb_DNA-binding	53.3	6.3e-17	92	134	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ XP_023536385.1 92 PFSQAEDDAIIAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 134 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MDIQNSSYSS STSDSSSSDS SHSGKPSPVN SAVPDKIKGP WSAEEDRVLT RLVERYGPRN 60 WSLISRYVKG RSGKSCRLRW CNQLCPGVEH HPFSQAEDDA IIAAHARYGN RWATIARLLP 120 GRTDNAVKNH WNSTLKRRVR NDRKSAGNRT SDVGGGSLVG VNDDPLTELT LATPGMDAGG 180 DVAVESDSRR ESMPAGFWEA MRGVVAREVR EYMTTTFSEN PGFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-56	MYB family protein