PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536505.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 561aa MW: 62661.5 Da PI: 8.438

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.3	3e-16	230	289	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023536505.1 230 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 289 78*****************988886678446***********************98 PP
2	AP2	50.9	3.8e-16	332	383	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_023536505.1 332 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 383 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MTMEVTSESQ QHSLYHHQSQ PTPAIAISNT MSDSFSASQH YNGDFLSPLS VMPLKSDGSL 60 CIMDSISRSQ TPETLPNISP KLEDFLGGAT HGREAATALS LDSRYCNQNP EANSERQQRI 120 LLHSQRYYSG MFHYPAEDVN KESHIASYCS EIRQDMEQRI NGCFGGGRNC QDLQTLSLSM 180 SPGSQSSCVT TPSQISQSGQ ATMETKKRAL ADRKQPVHRK SIDTFGQRTS QYRGVTRHRW 240 TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHLNFPLKN 300 YELQIEEMMN MNRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY 360 LGTFGTQEEA AEAYDIAAIK FRGINAVTNF DTSRYDVERI MASSSLLSGE FARRNRDHKP 420 TNAIKHEEPK QNISRTDPAE VYNNNLDWRT VFHENLLLDP SASVESIDQK SMASSGGYLN 480 NLIGVVVETE GSSKYKAHFS NASSVVSSLS SSRETSPDKP NGSSSVPFGS NGRSIWLPSP 540 PQMRPAPVSL PVESTVGWND A

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MTMEVTSESQ QHSLYHHQSQ PTPAIAISNT MSDSFSASQH YNGDFLSPLS VMPLKSDGSL  60
CIMDSISRSQ TPETLPNISP KLEDFLGGAT HGREAATALS LDSRYCNQNP EANSERQQRI  120
LLHSQRYYSG MFHYPAEDVN KESHIASYCS EIRQDMEQRI NGCFGGGRNC QDLQTLSLSM  180
SPGSQSSCVT TPSQISQSGQ ATMETKKRAL ADRKQPVHRK SIDTFGQRTS QYRGVTRHRW  240
TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHLNFPLKN  300
YELQIEEMMN MNRQEYVAHL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY  360
LGTFGTQEEA AEAYDIAAIK FRGINAVTNF DTSRYDVERI MASSSLLSGE FARRNRDHKP  420
TNAIKHEEPK QNISRTDPAE VYNNNLDWRT VFHENLLLDP SASVESIDQK SMASSGGYLN  480
NLIGVVVETE GSSKYKAHFS NASSVVSSLS SSRETSPDKP NGSSSVPFGS NGRSIWLPSP  540
PQMRPAPVSL PVESTVGWND A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-141	AP2 family protein