PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536786.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 238aa MW: 27716.9 Da PI: 7.8995

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.4e-15	15	60	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W eEd++l ++v+ +G g+W+t++++ g+ R +k+c++rw +yl XP_023536786.1 15 LWKSEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60 6*******************************************97 PP
2	Myb_DNA-binding	52.6	1.1e-16	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l XP_023536786.1 66 RGGMSKEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 67799***************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MEESKATKQQ AKKNLWKSEE DLILRNYVET HGEGNWATVS QESGLMRGGK SCRLRWKNYL 60 RPNIKRGGMS KEEEDLIIRM HKLLGNRWSL IAGRLPGRTD NEVKNYWNTH LNKNGLQDKR 120 KVNESSSCKK KDEDDGNNKK QKKVINQTSY PQPQMCSDNW AKQAHDIQRR NQEENREVTD 180 LWNMDDITSS HYNINCPMVP ANNATFNFDD EPYFNHLDPF FLIEAFGCSS VDASLENM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	5e-63	MYB family protein