PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536858.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 963aa MW: 108160 Da PI: 9.0145

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.2e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rW+t E e++++a +++G + Wk++a+ gR+ +++ XP_023536858.1 46 RWSTREIEIFYEAYRKYGQD-WKKVASSTY-GRSIEMV 81 9***************99.***9998.9988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence
MAPPKKSTSR NKRILHSNNP SAEKSYTSSQ RSKKRKKNLC EKLGPRWSTR EIEIFYEAYR 60 KYGQDWKKVA SSTYGRSIEM VEALYNMNRA YLSLPEGTAS VVGLIALMTD YYNVMEGRDS 120 ERDNYHASGF QESPKTNQGK VQMSFSNEDY CTSSVAANGG CLALLRSLYH GSQPRVVQKR 180 TPRVPISYSN KRSEWKNHAS GNKSSKKSEF HVSSDEVAHG ATLALAEASQ RGGTSTTSMP 240 CKIKENLKSS YEVSGGRKGR PIEQFGYDPS LIVDIESART VKAHRKMKKR YRKEKVLDDK 300 DRQFHQSVDY LTENRPEAPI MDGVGSLSVP EGKVDSEISN ADCELSFPLV QRKKSRKQSR 360 GDGNIAVDAL QTLADLSSVM PVTAMEPEAS VQIVEETDSF NLENKSCIED KAKQIMVPET 420 FNIEDKAKQI MVPETFNIED TGYGKSKPGS DLSIVIPDTK IPVDAHLREN LKTATSGHTK 480 PMNNENQVTL PIKQGSRSRC KMGLRRLLTH QKTKPCDEKL EKELRKYSPS VQDRAFFLKD 540 KLSNCMSSTL VRRWCIFEWF YSAIDYPWFA RREFVEYLDH VGLKNIPRLT RLEWSVIRSS 600 LGKPRRLSEC FLHGERMKLK LFRESVRQIY ADLHAGSREG LPTDLARPLT VGQRVIALLP 660 NTLKVLDGIV LTVNHDKYRI QFDNQEIGVK LVMDFDCMPF NPMDNLPVAL RCQSRSINAP 720 SLECKEPKAN SHPNLSRELE KASNPYTIDT LVPSTTFNLA QHNTFPGNSL PPWSMSPSLA 780 NTRAPSGIPH SLNVSHESGC GVVDIVRGSR EKAQLMVNVA IEVMLSTSQG DDPLTIICGA 840 LHSFESFEYQ KPLSKSQEYI NDSLGPFNQL CSLEHLSTSD LISPRSRRSD KDYGGIPSNL 900 ITSCVATLLM IQACVEYPYP PGDVAQILGL AVKSLHPRCS QNLHFYKEIE TCMGRICSNL 960 NSI

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence

MAPPKKSTSR NKRILHSNNP SAEKSYTSSQ RSKKRKKNLC EKLGPRWSTR EIEIFYEAYR  60
KYGQDWKKVA SSTYGRSIEM VEALYNMNRA YLSLPEGTAS VVGLIALMTD YYNVMEGRDS  120
ERDNYHASGF QESPKTNQGK VQMSFSNEDY CTSSVAANGG CLALLRSLYH GSQPRVVQKR  180
TPRVPISYSN KRSEWKNHAS GNKSSKKSEF HVSSDEVAHG ATLALAEASQ RGGTSTTSMP  240
CKIKENLKSS YEVSGGRKGR PIEQFGYDPS LIVDIESART VKAHRKMKKR YRKEKVLDDK  300
DRQFHQSVDY LTENRPEAPI MDGVGSLSVP EGKVDSEISN ADCELSFPLV QRKKSRKQSR  360
GDGNIAVDAL QTLADLSSVM PVTAMEPEAS VQIVEETDSF NLENKSCIED KAKQIMVPET  420
FNIEDKAKQI MVPETFNIED TGYGKSKPGS DLSIVIPDTK IPVDAHLREN LKTATSGHTK  480
PMNNENQVTL PIKQGSRSRC KMGLRRLLTH QKTKPCDEKL EKELRKYSPS VQDRAFFLKD  540
KLSNCMSSTL VRRWCIFEWF YSAIDYPWFA RREFVEYLDH VGLKNIPRLT RLEWSVIRSS  600
LGKPRRLSEC FLHGERMKLK LFRESVRQIY ADLHAGSREG LPTDLARPLT VGQRVIALLP  660
NTLKVLDGIV LTVNHDKYRI QFDNQEIGVK LVMDFDCMPF NPMDNLPVAL RCQSRSINAP  720
SLECKEPKAN SHPNLSRELE KASNPYTIDT LVPSTTFNLA QHNTFPGNSL PPWSMSPSLA  780
NTRAPSGIPH SLNVSHESGC GVVDIVRGSR EKAQLMVNVA IEVMLSTSQG DDPLTIICGA  840
LHSFESFEYQ KPLSKSQEYI NDSLGPFNQL CSLEHLSTSD LISPRSRRSD KDYGGIPSNL  900
ITSCVATLLM IQACVEYPYP PGDVAQILGL AVKSLHPRCS QNLHFYKEIE TCMGRICSNL  960
NSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	37	KKRKK
2	285	293	RKMKKRYRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-137	MYB_related family protein