PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023536970.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 849aa    MW: 92715.4 Da    PI: 6.0047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023536970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-182885457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  XP_023536970.1 28 YVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCpilaNIEPKQIKVWFQNRRCREKQ 85
                    5789****************************************************97 PP
2START150.81.2e-471693762204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee ++++++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++    e+l+d++ W ++++++e+  +  +g  g+++l 
  XP_023536970.1 169 IAEEILAAFLSKATGTAIDWVQMPGMKPGPDSVGIFAVSQSCSGVAARACGLVSLEPM-KIDEILKDRPSWFRDCRSVEVFTTFPTGngGTIELV 262
                     789999****************************************************.8999999999*****************999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+++Ry+++l+ g ++++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l+  ++++++r+l+
  XP_023536970.1 263 YTQVYAPTTLAPaRDFWTLRYTKTLENGNLAVCERSLSGSGTGPNsasAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEPGSVPEVVRPLY 357
                     *************************************98877777688999******************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ a ++k++ a++++ +
  XP_023536970.1 358 ESSKAVAQKMTIAAFRYVR 376
                     *************998865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    
MAMAMATAHH RESGDGGIDG HLDSTGKYVR YTTEQVEALE RVYAECPKPS SLRRQQLVRD  60
CPILANIEPK QIKVWFQNRR CREKQRKEAS RLQSLNSKLT AMNKLLMEEN DRLQKQVSQL  120
VCENGSMRQH LQTANAAAAP ITDASCDTVA TAPQHLLRDA SSPAGLLSIA EEILAAFLSK  180
ATGTAIDWVQ MPGMKPGPDS VGIFAVSQSC SGVAARACGL VSLEPMKIDE ILKDRPSWFR  240
DCRSVEVFTT FPTGNGGTIE LVYTQVYAPT TLAPARDFWT LRYTKTLENG NLAVCERSLS  300
GSGTGPNSAS AAQFVRAEML PSGYLIRPCD GGGSIIHIVD HLNLEPGSVP EVVRPLYESS  360
KAVAQKMTIA AFRYVRQVAQ ETSGEVVYSL GRQPAVLRTF SQRLSRGFNE AVNGFNDDGW  420
SLMNCDGAED VSLAINSSKN VNTSYDPVNS LAFHAGVLCA KASMLIQNVP PIALIRFLRE  480
HRSEWADFNV DAYSAASLKT GSYVYPGMRP TRFTGSQIIM PLGHTIEQEE LLEVVRLESH  540
PLAQEDTFMS RDVHLLQMCT GIDENAVGAC SELVFAPINE MFPDDAVLLP SGFRIIPLHS  600
ETGDSKHTWK NSNRTMDLTS NLEVGSSASQ DAAAASTSNF RSVLTIAFQF SFGSNLQDDV  660
AAMARQYVRS VVSAVQRVAV AISPSGLSLP SERRLSSACP EALTLARWIC YGYRCHTGTE  720
LVLSDSVDGD SVLKHLWNHQ DAILCCSLKS LPPVFMFANQ AGLDMLETTL VALQDITLDK  780
ILGDSALKAF SADFSNLMHQ GFAYIPAGIC ISTMGRHASF EQAIAWKVLA EDESTVHCLA  840
FSFVNWSFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein