PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537082.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Whirly

Protein Properties

Length: 275aa MW: 30699 Da PI: 9.7494

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	212.4	4.5e-66	94	231	1	138
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 s+yk+kaal+++++ p+f+ +dsg++k++r+G+++l+la+a+++r+ydW++kq+f+ls te+++lv+l+++esceffhdp +++s+eGkvrk lk XP_023537082.1 94 SIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVSLGPRESCEFFHDPYKGKSDEGKVRKILK 188 7******************************************************************************************** PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 vePlpdGsG+f+nlsv+n+l++++es+++P++kae++vl +++ XP_023537082.1 189 VEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAF 231 *************************************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MLRLQWLSSS LLPPLNPPEL CAQPCSNRRR CRFNSSRQLF TLTATRKPSP KCQYASWNTQ 60 QPAFEPASQT DSFSPQTSAG AAAALPPRFF VGHSIYKGKA ALSIEPRPPE FTPIDSGAFK 120 VSRQGFVMLQ LAPAAGVRQY DWSRKQVFSL SLTELGSLVS LGPRESCEFF HDPYKGKSDE 180 GKVRKILKVE PLPDGSGHFF NLSVQNKLIN VDESIYIPIT KAEYTVLVEA FKFILPHLMG 240 WHTIANTMTR PEDSSRVNNA NPRYGGESGG FEWSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-113	Whirly family protein