PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537457.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 473aa MW: 53207.3 Da PI: 6.8406

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537457.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.9e-15	22	66	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT++Ed++l + ++q+G+++W+ Ia+++ +t qc+ rw++yl XP_023537457.1 22 SWTQQEDDILREQINQHGTENWAIIASKFK-DKTTRQCRRRWYTYL 66 6**************************9.***********97 PP
2	Myb_DNA-binding	45.2	2.2e-14	72	115	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd+ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + XP_023537457.1 72 KGGWSPEEDLLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFTT 115 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MQDTKKKLAT EDCKKKERHI VSWTQQEDDI LREQINQHGT ENWAIIASKF KDKTTRQCRR 60 RWYTYLNSDF KKGGWSPEED LLLCEAQKIF GNRWTEIAKV VSGRTDNAVK NRFTTLCKKR 120 AKYEALAKEN SSSFINHNNK RVLFQKGSND VSSETSQSGK RIRRAHISHT TESCSLDDGL 180 KKPCSAMDQQ LRAPFAVLVE NVHSIDNLPA EFPMNDAEGL KTTQGNKNQE TFIKKDDPKV 240 TALTQQAELL SSLALKVNSE NTDQSLENAW KILQNFLSRT KENDIPKYVT PDIDLQVEDT 300 KGSVEDLRSS NDGSQWRESN LHESPGSSEY STGSTLVSQT AEEKIDQSQP EIGTHHQEPK 360 FESGSTCTGE QNNGESEKEI LPKTNLERAE AFKCCNERKI DTIASSFSSS EFSSPMHVIP 420 LFRSLAAGIP SPQFSESERS FLLKTLGVES PSLNPSVNPS QPPPCKRALL QSL

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MQDTKKKLAT EDCKKKERHI VSWTQQEDDI LREQINQHGT ENWAIIASKF KDKTTRQCRR  60
RWYTYLNSDF KKGGWSPEED LLLCEAQKIF GNRWTEIAKV VSGRTDNAVK NRFTTLCKKR  120
AKYEALAKEN SSSFINHNNK RVLFQKGSND VSSETSQSGK RIRRAHISHT TESCSLDDGL  180
KKPCSAMDQQ LRAPFAVLVE NVHSIDNLPA EFPMNDAEGL KTTQGNKNQE TFIKKDDPKV  240
TALTQQAELL SSLALKVNSE NTDQSLENAW KILQNFLSRT KENDIPKYVT PDIDLQVEDT  300
KGSVEDLRSS NDGSQWRESN LHESPGSSEY STGSTLVSQT AEEKIDQSQP EIGTHHQEPK  360
FESGSTCTGE QNNGESEKEI LPKTNLERAE AFKCCNERKI DTIASSFSSS EFSSPMHVIP  420
LFRSLAAGIP SPQFSESERS FLLKTLGVES PSLNPSVNPS QPPPCKRALL QSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-168	MYB family protein