PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537830.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 25318.8 Da PI: 6.5289

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.4	8.2e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+++fs tgkl+e+ss XP_023537830.1 9 KKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSS 59 68***********************************************96 PP
2	K-box	53.4	1.1e-18	89	170	17	98
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +a+L ke+ + +++Rh+ GedL+ L+l++L+qLe Le +l ++ ++K++ ++++i+ l k +l een++L++++ XP_023537830.1 89 ENSSHARLTKEVADMSHQLRHMRGEDLQGLNLEDLKQLEGVLEVGLDRVLQTKERKIMNEINALELKGARLMEENRTLNRQM 170 566789************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MAREKIKIKK ISNLTARQVT FSKRRRGLFK KAEELSVLCD AEVALLVFSA TGKLFEFSSS 60 SVKDVITRYN LHSSNLGELE DPSLDLQLEN SSHARLTKEV ADMSHQLRHM RGEDLQGLNL 120 EDLKQLEGVL EVGLDRVLQT KERKIMNEIN ALELKGARLM EENRTLNRQM IRLSNQRRPL 180 LVVSDVPVPE EGVSSDSAAN VYSCNSGPPA DDDSSDTSLK LGLACPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-90	MIKC_MADS family protein