PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537838.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 378aa MW: 41778 Da PI: 8.9077

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	44	171	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP+deel+++yL +k+++ +++ +++++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ XP_023537838.1 44 LPPGFRFHPSDEELITYYLLNKISDANFTG-RAVTDVDLNKFEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNT 137 79***********************999.88***********99999************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfykgrap+gekt+Wvmheyrl XP_023537838.1 138 dTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 171 77888*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MQVSSGDNLG TEKDGKRPEV MKKNNVAESD RNHQDHAQEQ DQTLPPGFRF HPSDEELITY 60 YLLNKISDAN FTGRAVTDVD LNKFEPWELP GKAKMGEKEW YFFSLRDRKY PTGVRTNRAT 120 NTGYWKTTGK DKEIFNTDTS ELVGMKKTLV FYKGRAPRGE KTNWVMHEYR LHSKTAFRTA 180 KDEWVVCRVF QKSAGPKKYP PNQTRAVNPY VNLEIAPPLL PPPLMQLGDP AAQYGYGRNY 240 ITGADLAELN RVLRAGGGGS GSGGSSHGIN LSMQPQFNYQ PAGGCFTISG LNLNLGGASS 300 QPVLRPMPPP VAAPMKIGQQ DIGSSVMAAT MANSSVIASA IGPETAYGAE ISNNGNGPGN 360 RFMNMDHCMD LENYWQNW

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MQVSSGDNLG TEKDGKRPEV MKKNNVAESD RNHQDHAQEQ DQTLPPGFRF HPSDEELITY  60
YLLNKISDAN FTGRAVTDVD LNKFEPWELP GKAKMGEKEW YFFSLRDRKY PTGVRTNRAT  120
NTGYWKTTGK DKEIFNTDTS ELVGMKKTLV FYKGRAPRGE KTNWVMHEYR LHSKTAFRTA  180
KDEWVVCRVF QKSAGPKKYP PNQTRAVNPY VNLEIAPPLL PPPLMQLGDP AAQYGYGRNY  240
ITGADLAELN RVLRAGGGGS GSGGSSHGIN LSMQPQFNYQ PAGGCFTISG LNLNLGGASS  300
QPVLRPMPPP VAAPMKIGQQ DIGSSVMAAT MANSSVIASA IGPETAYGAE ISNNGNGPGN  360
RFMNMDHCMD LENYWQNW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-108	NAC family protein