PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537958.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 28105.2 Da PI: 4.7158

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	46	98	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t +q++ Le+ F+ ++++ +e++ ++A+++gL rqV vWFqNrRa+ k XP_023537958.1 46 KRRLTLDQVRMLERTFNAENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSK 98 568999*********************************************99 PP
2	HD-ZIP_I/II	118.3	4.2e-38	45	136	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl+ +qv++LE++F++e+kLe+erKv++a+e+gl+prqvavWFqnrRAR ktk++E dye+L ++yd+lk++ ++L k ++eL++e+++ XP_023537958.1 45 KKRRLTLDQVRMLERTFNAENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKNDFDSLLKVNHELKAEVDQ 136 9**************************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MDSKTTHFLP LPESLPSLWI SDSCSSMEGE FSQPQVKADR NRGGKKRRLT LDQVRMLERT 60 FNAENKLEHE RKVQIAEEIG LRPRQVAVWF QNRRARSKTK KIEIDYESLN AEYDKLKNDF 120 DSLLKVNHEL KAEVDQLRDK WAATEKMKNP YEPVGDFYKV EMGSSRQEQG SRSSSKSDVF 180 YAESPTRENQ SRSGNFLRDE EEDDELGYLG ILEDELSADE LMDSFNVMSS AAEDQSFCFW 240 SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	9e-34	HD-ZIP family protein