PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537976.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 244aa MW: 27106.7 Da PI: 8.1339

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_023537976.1 14 KGPWSPEEDEKLKAYIQLHGTGgNWIALPNKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	40.5	6.2e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+++ +++ G++ W+ Ia+ ++ gRt++++k++w++ XP_023537976.1 69 GGFSEEEDDIICKLFVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRAPCCDKD NVKKGPWSPE EDEKLKAYIQ LHGTGGNWIA LPNKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDDIIC KLFVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGT 120 PKRVSSRKTA QTVTSSVMER LQLQKQLQGF QTAFSFDSTS TLWPPVSADG SLVNGECNLE 180 GCTGKSPVGS SSAAKEMNDC QESLFWWCND FDANSAAASN LWETTSALQS DGILQDFEVL 240 GYTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-86	MYB family protein