PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538019.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 524aa MW: 57697.2 Da PI: 9.2235

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.4	2.7e-16	226	285	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023538019.1 226 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 285 78*****************988886678446***********************98 PP
2	AP2	46.3	1e-14	328	379	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023538019.1 328 SVFRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 379 689*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MNNTNANKIK NKNMNGNMKS MNDHNNGWLG FYGIPDSAAA AAAMHLKSDA SLCLMGPLST 60 SQNQGIVPNS SPKLEDFLGG ATMADREHSL DLQNQEHHHI LIQNSHPYYS ALVPSDPQIL 120 PIDENELRSL RNWVSPPYYA ATPHNTLEQH ITGGGGGSAS IAGMSSGELQ SLSLSMSPGS 180 QSTSFSAPGQ ISSTAAVETK KRGPGKLCHK QPVHRKSIDT FGQRTSQYRG VTRHRWTGRY 240 EAHLWDNSCK KEGQTRKGRQ VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYQTE 300 LEEMKNMSRQ EYVAHLRRKS SGFSRGASVF RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 360 STQEEAAEAY DIAAIKFRGV NAVTNFDICR YDVERIMASS TLLAGELARR NKEVDTTVAP 420 NNNGTNSNST TDWKTTLYNN QQQQSITALG GYRNASFTMA LQDLIGTESL NTASQFSNSS 480 SLVTREGSPE KTKVAAVNGV SSWYPWPAAI AMAHLPVFAA WNDT

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MNNTNANKIK NKNMNGNMKS MNDHNNGWLG FYGIPDSAAA AAAMHLKSDA SLCLMGPLST  60
SQNQGIVPNS SPKLEDFLGG ATMADREHSL DLQNQEHHHI LIQNSHPYYS ALVPSDPQIL  120
PIDENELRSL RNWVSPPYYA ATPHNTLEQH ITGGGGGSAS IAGMSSGELQ SLSLSMSPGS  180
QSTSFSAPGQ ISSTAAVETK KRGPGKLCHK QPVHRKSIDT FGQRTSQYRG VTRHRWTGRY  240
EAHLWDNSCK KEGQTRKGRQ VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYQTE  300
LEEMKNMSRQ EYVAHLRRKS SGFSRGASVF RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  360
STQEEAAEAY DIAAIKFRGV NAVTNFDICR YDVERIMASS TLLAGELARR NKEVDTTVAP  420
NNNGTNSNST TDWKTTLYNN QQQQSITALG GYRNASFTMA LQDLIGTESL NTASQFSNSS  480
SLVTREGSPE KTKVAAVNGV SSWYPWPAAI AMAHLPVFAA WNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-132	AP2 family protein