PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538062.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 233aa    MW: 26241 Da    PI: 10.0134
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-15131220198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f++eh  + +++  +tl de g ++ + +  rk++    +++GWk+F  a++L +gD v+F+l++   ++++v 
  XP_023538062.1 131 FIKSMVRSHVSGCFWLGLPSHFCKEHL-P-TNDGVMTLIDEGGDEYPIIYLARKTG----FSGGWKGFSVAHKLADGDAVIFQLIK--PTTCKVY 217
                     89************************4.2.33447***************555555....99*********************997..6667899 PP

                     EE- CS
              B3  96 vfr 98 
                     +fr
  XP_023538062.1 218 IFR 220
                     987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGIANLSYEE CRRKRVEENK KRMDALNLPL LSQALIDSSP SKSKSKSSPS KQAKHREMKK  60
QLVVVRRSSR VAKQPGPVYA EVLVNRVAIP KRFSSARDYP DHFFASDEAR KNAFERAERL  120
QSVLEPNYPT FIKSMVRSHV SGCFWLGLPS HFCKEHLPTN DGVMTLIDEG GDEYPIIYLA  180
RKTGFSGGWK GFSVAHKLAD GDAVIFQLIK PTTCKVYIFR VGDLKEDSDS NSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-64B3 family protein