PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538103.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27512.9 Da PI: 5.6827

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.7	2e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs+ gklye+ss XP_023538103.1 9 KKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSS 59 68***********************************************96 PP
2	K-box	85.3	1.3e-28	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++e++++e+ kLkke+e Lq++qR++lGe+Le+L+ +eL qLe qLe+slk+iR +Kn+ +++q++el+kke+ l e+n+aLr+klee XP_023538103.1 82 HHLKDTEKWYEEYLKLKKEVEGLQHSQRRILGEELEDLETNELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEE 173 456789***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGRGKVELKK IENKINRQVT FTKRRNGLLK KAYELSILCD AEVALIVFST GGKLYEFSSS 60 SSIAKTLERY QRHSYGALAA SHHLKDTEKW YEEYLKLKKE VEGLQHSQRR ILGEELEDLE 120 TNELDQLEIQ LETSLKQIRF TKNQTVFDQL SELKKKEELL LETNQALRRK LEESSAALHS 180 SWEASEPNNL HYCGQPEAFL QGNNIALENS YNPAEVSNQE NAINSEPEGN ELPSHWMML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.1	1e-55	MIKC_MADS family protein