PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538153.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

YABBY

Protein Properties

Length: 189aa MW: 21241 Da PI: 8.6449

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	195.5	2.4e-60	6	161	4	167
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +s+ eq+Cy+ CnfCn +lavsvP + l+ +vtvrCGhC++l svn+a a q l+ ++ + ++ + + + +l s + +++ +t + XP_023538153.1 6 NSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNS-QA-SSHSHNGNAADYRVELGSSSKCNNKMKTRAPI 98 6789********************************************999999886.22.22223333444444444444444444444454 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 ++ ++n+d+ v ++rPPek+qrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWah+P+i XP_023538153.1 99 QN-TTNDDQRV-----INRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQ 161 44.34444444.....58***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MSSCINSAQE QLCYIPCNFC NIVLAVSVPC SNLLDIVTVR CGHCSNLWSV NMAAAFQSLS 60 WKNSQASSHS HNGNAADYRV ELGSSSKCNN KMKTRAPIQN TTNDDQRVIN RPPEKKQRVP 120 SAYNKFIKEE IQRIKANNPD ITHREAFSTA AKNWAHYPHI QCLMLEANNL KTQNDGSEKH 180 YMSVPGLHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	9e-78	YABBY family protein