PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538241.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 283aa    MW: 31386.9 Da    PI: 10.6692
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-1499143347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
   XP_023538241.1  99 PWTEEEHRMFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKY 143
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MVRKCSHCGN VGHNSRTCII QKEKIRGKFK LFGVHLDGVS SSSVATVAGA AAAALLKKSI  60
SMECLPSSSS SSSSCEKLSN GYLSDGLITK THERKKGVPW TEEEHRMFLV GLQKLGKGDW  120
RGISRKFVTT RTPTQVASHA QKYFLRLNSL DKRKHRRPSL FDVATRDKFR VQVVKGNNSK  180
PSNLPPSISF GIPSNSTPIH NHVHQSLLPI WFGYEDHKAF KFLENPIKCS SSSSHFHGKQ  240
KTKSHHQAPD LQLSLSTPKP VEQAEQQQHC CRNIPINGAI SVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151158DKRKHRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-57MYB_related family protein