PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538355.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 1088aa MW: 120820 Da PI: 6.447

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.5e-22	126	226	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F + +++ XP_023538355.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIR--DEK 217 99***************************9545444.38**********************************************4..466 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_023538355.1 218 SQLLLGIRH 226 667888875 PP
2	Auxin_resp	124.3	8.4e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k+ ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_023538355.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1088 aa Download sequence
MKAPPNGFVP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE 60 TDFIPNYPNL PSKLVCMLHN VILHADPETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRVFAGDSV LFIRDEKSQL LLGIRHANRQ QPALSSSVIS 240 SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYTKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWFGDD FGMKDTPSSI FPGLSLVQWM 420 SMQHNNQFPA AQSGILPSMV APSALHGTLT NDDPSKLLCF QAPVMSSSNL QFSKANQQNQ 480 VGQLPATSWS QQQQLQQLPP QPELRQQQQQ QPKQSQQQQQ TSQSALPNNG VGGANHLSNQ 540 SLQQPLVYSQ LQQQQLLAGN VQSHQTSQPS NKNSIETTSL LQETQFQPQI DQQPSLVSKH 600 HQQTQFQQAP LQLLQQSLSQ RTQQLPQVQQ FSQPIIPSEQ QLQWQLLQKL QQQQQQQQQQ 660 QQQQQPLVSP ASPLFPPQMI QPHPVHQQNQ QLPPLPLSNQ PQFNASGGSF QTEKHNSNGF 720 SSLGLMQSQQ VPITQSHNQF KPTTAIRGYS GLTDGDAPSC STSPSTNNCQ VSVSNLLNKN 780 QQGAATLGGD LVVEPATNLP QELPSKPDLR NKPEFPNSKG LDQLKYKGTV PDQVEASSSG 840 TSYCLDAGTI QQTFPLPTCL DNDVQSHPQT NIPFSNSIDG WAPDTLLSRG YDSQKDLQNL 900 LSNYEGGVPR DTETELSTAA IRSQSFGVPN LPFKPGCSND VNVNEAGALS SGLWANHGQR 960 MRTYTKVQKR GSVGRCIDVT RYKGYDELRH DLARMFGIEG QLEDPQRTDW KLVYVDHEND 1020 ILLVGDDPWE EFVSCVQSIK ILSSSEVQQM SLNGNLGHIQ APNQACSGTD SGNAWRGQYD 1080 DNSAASFN

Sequence ? help Back to Top

Protein Sequence Length: 1088 aa Download sequence

MKAPPNGFVP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE  60
TDFIPNYPNL PSKLVCMLHN VILHADPETD EVYAQMTLQP VNKYEKEALL ASDIGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRVFAGDSV LFIRDEKSQL LLGIRHANRQ QPALSSSVIS  240
SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYTKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWFGDD FGMKDTPSSI FPGLSLVQWM  420
SMQHNNQFPA AQSGILPSMV APSALHGTLT NDDPSKLLCF QAPVMSSSNL QFSKANQQNQ  480
VGQLPATSWS QQQQLQQLPP QPELRQQQQQ QPKQSQQQQQ TSQSALPNNG VGGANHLSNQ  540
SLQQPLVYSQ LQQQQLLAGN VQSHQTSQPS NKNSIETTSL LQETQFQPQI DQQPSLVSKH  600
HQQTQFQQAP LQLLQQSLSQ RTQQLPQVQQ FSQPIIPSEQ QLQWQLLQKL QQQQQQQQQQ  660
QQQQQPLVSP ASPLFPPQMI QPHPVHQQNQ QLPPLPLSNQ PQFNASGGSF QTEKHNSNGF  720
SSLGLMQSQQ VPITQSHNQF KPTTAIRGYS GLTDGDAPSC STSPSTNNCQ VSVSNLLNKN  780
QQGAATLGGD LVVEPATNLP QELPSKPDLR NKPEFPNSKG LDQLKYKGTV PDQVEASSSG  840
TSYCLDAGTI QQTFPLPTCL DNDVQSHPQT NIPFSNSIDG WAPDTLLSRG YDSQKDLQNL  900
LSNYEGGVPR DTETELSTAA IRSQSFGVPN LPFKPGCSND VNVNEAGALS SGLWANHGQR  960
MRTYTKVQKR GSVGRCIDVT RYKGYDELRH DLARMFGIEG QLEDPQRTDW KLVYVDHEND  1020
ILLVGDDPWE EFVSCVQSIK ILSSSEVQQM SLNGNLGHIQ APNQACSGTD SGNAWRGQYD  1080
DNSAASFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein